Publications

16 publications

2022

Nature Communications 18 Aug 2022

SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization

Dhiraj Mannar, James W. Saville, Zehua Sun, Xing Zhu, Michelle M. Marti, Shanti S. Srivastava, Alison M. Berezuk, Steven Zhou, Katharine S. Tuttle, Michele D. Sobolewski, Andrew Kim, Benjamin R. Treat, Priscila Mayrelle Da Silva Castanha, Jana L. Jacobs, Simon M. Barratt-Boyes, John W. Mellors, Dimiter S. Dimitrov, Wei Li, Sriram Subramaniam

This study explores neutralization by antibody fragment VH ab6 against major SARS-CoV-2 variants, revealing structural insights into spike mutations and antibody evasion.

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Nature Communications 8 Feb 2022

Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants

James W. Saville, Dhiraj Mannar, Xing Zhu, Shanti S. Srivastava, Alison M. Berezuk, Jean-Philippe Demers, Steven Zhou, Katharine S. Tuttle, Inna Sekirov, Andrew Kim, Wei Li, Dimiter S. Dimitrov, Sriram Subramaniam

This study evaluates the Delta and Kappa variants’ structural and biochemical fitness, highlighting their antibody escape mechanisms and ACE2 binding dynamics.

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2021

bioRxiv (preprint) 2021

Cryo-EM structure of the N501Y SARS-CoV-2 spike protein in complex with a potent neutralizing antibody

Xing Zhu, Dhiraj Mannar, Shanti Swaroop Srivastava, Alison Berezuk, Jean-Philippe Demers, James Saville, Karoline Leopold, Wei Li, Dimiter S Dimitrov, Katharine Tuttle, Steven Zhou, Sagar Chittori, Sriram Subramaniam

This study presents a cryo-EM structure of the N501Y spike protein of the UK variant of SARS-CoV-2, showing how the mutation increases infectivity while retaining neutralizing antibody binding sites.

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2020

Cell 15 Oct 2020

High Potency of a Bivalent Human VH Domain in SARS-CoV-2 Animal Models

Wei Li, Alexandra Schäfer, Swarali S. Kulkarni, Xianglei Liu, David R. Martinez, Chuan Chen, Zehua Sun, Sarah R. Leist, Aleksandra Drelich, and others

A novel human antibody domain, VH ab8, was developed showing strong neutralizing effects against SARS-CoV-2 in mice and hamsters. Its small size and bivalency made it highly effective in targeting the virus and blocking ACE2 interaction, positioning it as a promising COVID-19 therapeutic.

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IUCrJ Volume 7, Part 3 May 2020

Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures

Shanti Swaroop Srivastava, Joseph E. Darling, Jimmy Suryadi, James C. Morris, Mark E. Drew, Sriram Subramaniam

This study reports cryo-EM structures of Plasmodium vivax hexokinase (PvHK), revealing a unique tetrameric organization that is distinct from human hexokinases, providing insights for the design of parasite-selective antimalarial drugs.

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2019

Journal of Bacteriology Vol 201, No. 23 5 Nov 2019

βγ-Crystallination Endows a Novel Bacterial Glycoside Hydrolase 64 with Ca2+-Dependent Activity Modulation

Bal Krishnan, Shanti Swaroop Srivastava, Venu Sankeshi, Rupsi Garg, Sudhakar Srivastava, Rajan Sankaranarayanan, Yogendra Sharma

This study explores the role of a βγ-crystallin domain in modulating the enzymatic activity of a glycoside hydrolase, glucanallin, and its potential application in biofuel production from β-1,3-glucans.

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2018

Molecular Microbiology 14 Sept 2018

Interface interactions between βγ-crystallin domain and Ig-like domain render Ca2+-binding site inoperative in abundant perithecial protein of Neurospora crassa

Shanti Swaroop Srivastava, Rajeev Raman, Uday Kiran, Rupsi Garg, Swathi Chadalawada, Asmita D. Pawar, Rajan Sankaranarayanan, Yogendra Sharma

This study investigates how interdomain interactions in the abundant perithecial protein (APP) of *Neurospora crassa* render its Ca2+-binding site inactive, revealing a novel mode of Ca2+-binding regulation in proteins with both βγ-crystallin and Ig-like domains.

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2016

Biochemistry Vol 56, Issue 9 28 Dec 2016

A Transition Metal-Binding, Trimeric βγ-Crystallin from Methane-Producing Thermophilic Archaea, Methanosaeta thermophila

Shanti Swaroop Srivastava, Aditya Anand Jamkhindikar, Rajeev Raman, Maroor K. Jobby, Swathi Chadalawada, Rajan Sankaranarayanan, Yogendra Sharma

This study reveals that Methallin, a βγ-crystallin from Methanosaeta thermophila, is a trimeric, transition metal-binding protein, providing new insights into its potential biogeochemical roles and high-affinity metal ion binding.

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2014

Progress in Biophysics and Molecular Biology 1 Jul 2014

Microbial βγ-crystallins

Amita Mishra, Bal Krishnan, Shanti Swaroop Srivastava, Yogendra Sharma

This review highlights microbial βγ-crystallins as a diverse superfamily of Ca2+-binding proteins, noting their evolutionary adaptations and the need for experimental characterization.

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Journal of Biological Chemistry 18 Apr 2014

Ca2+-binding motif of βγ-crystallins

Shanti Swaroop Srivastava, Amita Mishra, Bal Krishnan, Yogendra Sharma

This study investigates the βγ-crystallin-type double clamp motif for Ca2+ binding, highlighting its structural diversity and potential functional implications.

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2012

Biochemistry Vol 51/Issue 43 8 Oct 2012

Aggregation-Prone Near-Native Intermediate Formation during Unfolding of a Structurally Similar Nonlenticular βγ-Crystallin Domain

V. Rajanikanth, Shanti Swaroop Srivastava, Aditya K. Singh, M. Rajyalakshmi, Kousik Chandra, Penmatsa Aravind, Rajan Sankaranarayanan, Yogendra Sharma

This study investigates the unfolding pathways of βγ-crystallins and the formation of an aggregation-prone intermediate state in the Crybg3_D3 domain, offering insights into its structural and functional divergence in non-lens tissues of vertebrates.

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